Genomic Clock Algorithm

<BODY text="#000066" link="blue" vlink="purple" alink="red" background="../../../DRSRL/DNAandOtherPresentation/index6.gif"> <A NAME="pgtop"></A> <A HREF="indexc.htm"><Img Src="flconts.gif" ALT="Table of Contents" WIDTH=24 HEIGHT=24></A> <A HREF="index5.htm"><Img Src="fllarrow.gif" ALT="Previous" WIDTH=24 HEIGHT=24></A> <A HREF="index7.htm"><Img Src="flrarrow.gif" ALT="Next" WIDTH=24 HEIGHT=24></A> <BR> <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"><TR> <TD> <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD COLSPAN=0 HEIGHT=26><br></TD></TR> <TR> <TD WIDTH=21 HEIGHT=28><br></td> <TD WIDTH=378 HEIGHT=28 align="left" valign="middle" > <B><FONT face="Times New Roman"><FONT color="#FFFF00"><FONT size="+2">Genomic Clock Algorithm</B></FONT></FONT></FONT></TD> <TD COLSPAN=0><SPACER type="horizontal" size=154><br></TD> </TR> </TABLE> </TD> </TR> <TR> <TD> <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD COLSPAN=0 HEIGHT=18><br></TD></TR> <TR> <TD WIDTH=11 HEIGHT=264><br></td> <TD WIDTH=156 HEIGHT=264 align="left" valign="top" > <FONT face="Times New Roman"><FONT color="#FFFF00"><FONT size="-3">The initial set of work is based on the idea of a genomic clock. Each next nucleic acid in a sequence moves out in some set direction based on the prior nucleic acid. The angle of the line is calculated anew from each successive sequence point, considering that point the </FONT></FONT></FONT><FONT face="Times New Roman"><FONT color="#FFFF00"><FONT size="-3">center</FONT></FONT></FONT><FONT face="Times New Roman"><FONT color="#FFFF00"><FONT size="-3"> of an imaginary circle. The radius of that circle is used as the length of the lines drawn and is adjustable to display more or less data on a single screen. The angles are calculated from a base horizontal line move to the right, considered a move of 0 or 360. Figure 1 shows the nucleic transitions and the matching angles of movement. The next two pages contain legends to learn how these mappings look and sound with made up sequences.</FONT></FONT></FONT></TD> <TD COLSPAN=0><SPACER type="horizontal" size=386><br></TD> </TR> </TABLE> </TD> </TR> <TR> <TD> <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR> <TD WIDTH=38 HEIGHT=4><br></td> <TD WIDTH=4 HEIGHT=4 > <IMG BORDER=0 WIDTH=4 HEIGHT=4 SRC="indexo2.jpg" ALT=""></TD> <TD WIDTH=137 HEIGHT=216><br></td> <TD WIDTH=224 HEIGHT=216 > <IMG BORDER=0 WIDTH=224 HEIGHT=216 SRC="indexo3.jpg" ALT=""></TD> <TD COLSPAN=0><SPACER type="horizontal" size=150><br></TD> </TR> </TABLE> </TD> </TR> <TR><TD COLSPAN=0 HEIGHT=6><br></TD></TR> </TABLE> <HR ALIGN="left" size=5 WIDTH="65%"> <A NAME="pgbot"></A> <BR> <FONT SIZE="-2">Published by <A HREF="http://www.lotus.com">Lotus</A>® <A HREF="http://www.lotus.com/freelance">Freelance Graphics</A>®</FONT> </BODY>